Bookkeeping & tax for doctors & medical practices
For GPs, specialists, locums and practice owners – accurate books, correct practitioner payments and tax returns handled by a registered tax agent.
- Service fee & practitioner payment models
- Payroll tax exposure reviewed
- Doctors' personal returns handled too
Medical practices face unique financial rules
Medical practices typically run on service agreements where doctors collect patient fees and pay the practice a service fee. Getting these arrangements, the GST on service fees, and practitioner payments right is essential – and state revenue offices have increasingly looked at whether these arrangements attract payroll tax.
We help practice owners and individual doctors keep accurate records, understand their obligations and plan their tax.
- Service fee calculations are manual and error-prone
- Uncertain about payroll tax exposure
- Medicare and patient fees don't reconcile
- Personal and practice finances intertwined
- Tax time is a scramble
How we help doctors & medical practices
Practice bookkeeping
Medicare, patient and hospital income reconciled from your practice software.
Service fee arrangements
Service fees calculated, invoiced and GST applied correctly.
Payroll tax reviews
Arrangements reviewed for state payroll tax exposure, with records kept to support your position.
Staff payroll
Nurses, reception and practice staff paid correctly with STP reporting.
Doctors' tax returns
Individual returns for GPs, specialists, registrars and locums.
Structures & planning
Company, trust and service entity returns with tax planning.
A practical guide to bookkeeping for doctors & medical practices
Medical practices usually operate under service arrangements, where practitioners collect patient fees and pay the practice a service fee. Getting those arrangements right matters: medical services are generally GST-free, but the service fees charged by a practice to its doctors are generally taxable. Practitioner payments, Medicare and DVA income and hospital billing all need to reconcile accurately.
State revenue offices have increasingly examined whether some medical centre arrangements create payroll tax liabilities. Accurate records and clear agreements are essential, and specialist legal advice may be needed for your specific arrangements.
We look after practice bookkeeping, service fee calculations, staff payroll and BAS for practice owners, and prepare individual, company and trust tax returns for GPs, specialists, registrars and locums – so the practice and the practitioners are planned together.
- Service fee arrangements
- GST on service fees
- Medicare & DVA reconciliation
- Payroll tax record keeping
- Doctors' individual returns
- Practice company & trust returns
Specialists, GPs, locums and practice owners
Whether you're a practice owner, a contracted GP, a specialist with rooms and hospital income, or a locum working across multiple sites, your finances need someone who understands how medical income works. Most medical services are GST-free, but service fees you pay to, or receive from, a practice are usually taxable – and that detail matters.
- Best Practice & MedicalDirector
- Medicare & DVA income
- Hospital & private billing
- Service fee models
- Locum income
- Medical equipment
- Practice bookkeeping
- Payroll & STP
- BAS & GST
- Doctors' individual returns
- Company & trust returns
Getting started is easy
Switching bookkeepers is simpler than you think. We handle the transition for you.
Free consultation
A 30-minute chat about your business, your software and what's not working.
Fixed-fee proposal
A clear scope and fixed monthly fee – no timesheets, no surprise bills.
Onboarding
We tidy up your file, connect your apps and set up your reporting.
Ongoing support
Books, BAS, payroll and tax handled, with a real person on call.
Popular services for doctors & medical practices
Individual tax returns
Every deduction you're entitled to, lodged properly
Company tax returns
Company returns prepared and lodged by a registered tax agent
Trust tax returns
Trust returns, distributions and resolutions handled
Payroll & STP
Pay runs, super and Single Touch Payroll handled for you
BAS & GST lodgement
Accurate BAS and IAS lodged on time, every time
Financial reporting
Monthly P&L, balance sheet and cash flow reports
Doctors & medical practices bookkeeping FAQs
Do doctors need to charge GST?
Medical services are generally GST-free. However, service fees paid by doctors to a practice, and some non-medical services or products, are usually subject to GST. We make sure each income stream is treated correctly.
Can service agreements trigger payroll tax?
In some circumstances, yes. State revenue offices have found that payments made through certain medical centre arrangements can be treated as wages for payroll tax. We review your arrangements and records and work with your legal advisers where needed.
Do you prepare tax returns for individual doctors?
Yes. We prepare returns for GPs, specialists, registrars and locums, including work-related deductions, investment income and structures.
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Job costing, progress claims, subbies and TPAR sorted.
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Practice software, GST-free services and contractor pay.
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Project fees, WIP and profitability by stage.
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Billable time, retainers and utilisation reporting.
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Retainers, freelancers and profit per client.
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Household finances, investments and family trusts.
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Shopify, Amazon, Stripe and inventory reconciled.
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Systems, forecasts and structure for the next stage.
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