Bookkeeping for doctors & medical practices

Bookkeeping & tax for doctors & medical practices

For GPs, specialists, locums and practice owners – accurate books, correct practitioner payments and tax returns handled by a registered tax agent.

  • Service fee & practitioner payment models
  • Payroll tax exposure reviewed
  • Doctors' personal returns handled too
Registered Tax Agent Xero · MYOB · QuickBooks Fixed-fee pricing
  • Registered Tax Agent
  • Xero, MYOB & QuickBooks
  • Fixed monthly fees
  • Australia-wide, 100% online
We understand your world

Medical practices face unique financial rules

Medical practices typically run on service agreements where doctors collect patient fees and pay the practice a service fee. Getting these arrangements, the GST on service fees, and practitioner payments right is essential – and state revenue offices have increasingly looked at whether these arrangements attract payroll tax.

We help practice owners and individual doctors keep accurate records, understand their obligations and plan their tax.

Sound familiar?
  • Service fee calculations are manual and error-prone
  • Uncertain about payroll tax exposure
  • Medicare and patient fees don't reconcile
  • Personal and practice finances intertwined
  • Tax time is a scramble
What we do

How we help doctors & medical practices

Practice bookkeeping

Medicare, patient and hospital income reconciled from your practice software.

Service fee arrangements

Service fees calculated, invoiced and GST applied correctly.

Payroll tax reviews

Arrangements reviewed for state payroll tax exposure, with records kept to support your position.

Staff payroll

Nurses, reception and practice staff paid correctly with STP reporting.

Doctors' tax returns

Individual returns for GPs, specialists, registrars and locums.

Structures & planning

Company, trust and service entity returns with tax planning.

Industry guide

A practical guide to bookkeeping for doctors & medical practices

Medical practices usually operate under service arrangements, where practitioners collect patient fees and pay the practice a service fee. Getting those arrangements right matters: medical services are generally GST-free, but the service fees charged by a practice to its doctors are generally taxable. Practitioner payments, Medicare and DVA income and hospital billing all need to reconcile accurately.

State revenue offices have increasingly examined whether some medical centre arrangements create payroll tax liabilities. Accurate records and clear agreements are essential, and specialist legal advice may be needed for your specific arrangements.

We look after practice bookkeeping, service fee calculations, staff payroll and BAS for practice owners, and prepare individual, company and trust tax returns for GPs, specialists, registrars and locums – so the practice and the practitioners are planned together.

Key areas we manage
  • Service fee arrangements
  • GST on service fees
  • Medicare & DVA reconciliation
  • Payroll tax record keeping
  • Doctors' individual returns
  • Practice company & trust returns
Specialist knowledge

Specialists, GPs, locums and practice owners

Whether you're a practice owner, a contracted GP, a specialist with rooms and hospital income, or a locum working across multiple sites, your finances need someone who understands how medical income works. Most medical services are GST-free, but service fees you pay to, or receive from, a practice are usually taxable – and that detail matters.

  • Best Practice & MedicalDirector
  • Medicare & DVA income
  • Hospital & private billing
  • Service fee models
  • Locum income
  • Medical equipment
Services we provide
  • Practice bookkeeping
  • Payroll & STP
  • BAS & GST
  • Doctors' individual returns
  • Company & trust returns

Getting started is easy

Switching bookkeepers is simpler than you think. We handle the transition for you.

Free consultation

A 30-minute chat about your business, your software and what's not working.

Fixed-fee proposal

A clear scope and fixed monthly fee – no timesheets, no surprise bills.

Onboarding

We tidy up your file, connect your apps and set up your reporting.

Ongoing support

Books, BAS, payroll and tax handled, with a real person on call.

Services

Popular services for doctors & medical practices

FAQ

Doctors & medical practices bookkeeping FAQs

Ask us directly
Do doctors need to charge GST?

Medical services are generally GST-free. However, service fees paid by doctors to a practice, and some non-medical services or products, are usually subject to GST. We make sure each income stream is treated correctly.

Can service agreements trigger payroll tax?

In some circumstances, yes. State revenue offices have found that payments made through certain medical centre arrangements can be treated as wages for payroll tax. We review your arrangements and records and work with your legal advisers where needed.

Do you prepare tax returns for individual doctors?

Yes. We prepare returns for GPs, specialists, registrars and locums, including work-related deductions, investment income and structures.

Take the admin out of your practice

Book a free consultation to see how TK Bookkeepers can help your medical business run smoother and more profitably.

Free 30-minute consult Fixed-fee quote No lock-in contracts